measure network
Gromov-Wasserstein Graph Coarsening
Taveras, Carlos A., Segarra, Santiago, Uribe, César A.
We study the problem of graph coarsening within the Gromov-Wasserstein geometry. Specifically, we propose two algorithms that leverage a novel representation of the distortion induced by merging pairs of nodes. The first method, termed Greedy Pair Coarsening (GPC), iteratively merges pairs of nodes that locally minimize a measure of distortion until the desired size is achieved. The second method, termed $k$-means Greedy Pair Coarsening (KGPC), leverages clustering based on pairwise distortion metrics to directly merge clusters of nodes. We provide conditions guaranteeing optimal coarsening for our methods and validate their performance on six large-scale datasets and a downstream clustering task. Results show that the proposed methods outperform existing approaches on a wide range of parameters and scenarios.
- South America > Chile > Santiago Metropolitan Region > Santiago Province > Santiago (0.40)
- North America > United States > Texas > Harris County > Houston (0.04)
- Europe > France (0.04)
- Asia > South Korea > Gyeongsangbuk-do > Pohang (0.04)
- Government (0.68)
- Health & Medicine > Pharmaceuticals & Biotechnology (0.67)
Metrics for Parametric Families of Networks
Gómez, Mario, Ma, Guanqun, Needham, Tom, Wang, Bei
We introduce a general framework for analyzing data modeled as parameterized families of networks. Building on a Gromov-Wasserstein variant of optimal transport, we define a family of parameterized Gromov-Wasserstein distances for comparing such parametric data, including time-varying metric spaces induced by collective motion, temporally evolving weighted social networks, and random graph models. We establish foundational properties of these distances, showing that they subsume several existing metrics in the literature, and derive theoretical approximation guarantees. In particular, we develop computationally tractable lower bounds and relate them to graph statistics commonly used in random graph theory. Furthermore, we prove that our distances can be consistently approximated in random graph and random metric space settings via empirical estimates from generative models. Finally, we demonstrate the practical utility of our framework through a series of numerical experiments.
- Europe > United Kingdom > England > Cambridgeshire > Cambridge (0.04)
- North America > United States > Ohio (0.04)
- North America > United States > Michigan (0.04)
- (2 more...)
- Health & Medicine (0.46)
- Information Technology (0.34)
Conic Formulations of Transport Metrics for Unbalanced Measure Networks and Hypernetworks
Oliver, Mary Chriselda Antony, Hartman, Emmanuel, Needham, Tom
The Gromov-Wasserstein (GW) variant of optimal transport, designed to compare probability densities defined over distinct metric spaces, has emerged as an important tool for the analysis of data with complex structure, such as ensembles of point clouds or networks. To overcome certain limitations, such as the restriction to comparisons of measures of equal mass and sensitivity to outliers, several unbalanced or partial transport relaxations of the GW distance have been introduced in the recent literature. This paper is concerned with the Conic Gromov-Wasserstein (CGW) distance introduced by S ejourn e, Vialard, and Peyr e [35]. We provide a novel formulation in terms of semi-couplings, and extend the framework beyond the metric measure space setting, to compare more general network and hypernetwork structures. With this new formulation, we establish several fundamental properties of the CGW metric, including its scaling behavior under dilation, variational convergence in the limit of volume growth constraints, and comparison bounds with established optimal transport metrics. We further derive quantitative bounds that characterize the robustness of the CGW metric to perturbations in the underlying measures. The hypernetwork formulation of CGW admits a simple and provably convergent block coordinate ascent algorithm for its estimation, and we demonstrate the computational tractability and scalability of our approach through experiments on synthetic and real-world high-dimensional and structured datasets.
- Europe > United Kingdom > England > Cambridgeshire > Cambridge (0.14)
- North America > United States > Texas > Harris County > Houston (0.04)
- North America > United States > Florida > Leon County > Tallahassee (0.04)
- Information Technology > Artificial Intelligence > Representation & Reasoning (1.00)
- Information Technology > Artificial Intelligence > Machine Learning > Statistical Learning (1.00)
- Information Technology > Artificial Intelligence > Machine Learning > Supervised Learning > Representation Of Examples (0.35)
Fused Gromov-Wasserstein Variance Decomposition with Linear Optimal Transport
Wilson, Michael, Needham, Tom, Srivastava, Anuj
Wasserstein distances form a family of metrics on spaces of probability measures that have recently seen many applications. However, statistical analysis in these spaces is complex due to the nonlinearity of Wasserstein spaces. One potential solution to this problem is Linear Optimal Transport (LOT). This method allows one to find a Euclidean embedding, called LOT embedding, of measures in some Wasserstein spaces, but some information is lost in this embedding. So, to understand whether statistical analysis relying on LOT embeddings can make valid inferences about original data, it is helpful to quantify how well these embeddings describe that data. To answer this question, we present a decomposition of the Fr\'echet variance of a set of measures in the 2-Wasserstein space, which allows one to compute the percentage of variance explained by LOT embeddings of those measures. We then extend this decomposition to the Fused Gromov-Wasserstein setting. We also present several experiments that explore the relationship between the dimension of the LOT embedding, the percentage of variance explained by the embedding, and the classification accuracy of machine learning classifiers built on the embedded data. We use the MNIST handwritten digits dataset, IMDB-50000 dataset, and Diffusion Tensor MRI images for these experiments. Our results illustrate the effectiveness of low dimensional LOT embeddings in terms of the percentage of variance explained and the classification accuracy of models built on the embedded data.
- North America > United States > New York > New York County > New York City (0.04)
- North America > Canada > Quebec > Capitale-Nationale Region > Québec (0.04)
- North America > Canada > Quebec > Capitale-Nationale Region > Quebec City (0.04)
- Asia > China > Guangdong Province > Shenzhen (0.04)
- Health & Medicine > Diagnostic Medicine > Imaging (0.67)
- Health & Medicine > Therapeutic Area (0.46)
Geometry of the Space of Partitioned Networks: A Unified Theoretical and Computational Framework
Zhang, Stephen Y, Lan, Fangfei, Zhou, Youjia, Barbensi, Agnese, Stumpf, Michael P H, Wang, Bei, Needham, Tom
Interactions and relations between objects may be pairwise or higher-order in nature, and so network-valued data are ubiquitous in the real world. The "space of networks", however, has a complex structure that cannot be adequately described using conventional statistical tools. We introduce a measure-theoretic formalism for modeling generalized network structures such as graphs, hypergraphs, or graphs whose nodes come with a partition into categorical classes. We then propose a metric that extends the Gromov-Wasserstein distance between graphs and the co-optimal transport distance between hypergraphs. We characterize the geometry of this space, thereby providing a unified theoretical treatment of generalized networks that encompasses the cases of pairwise, as well as higher-order, relations. In particular, we show that our metric is an Alexandrov space of non-negative curvature, and leverage this structure to define gradients for certain functionals commonly arising in geometric data analysis tasks. We extend our analysis to the setting where vertices have additional label information, and derive efficient computational schemes to use in practice. Equipped with these theoretical and computational tools, we demonstrate the utility of our framework in a suite of applications, including hypergraph alignment, clustering and dictionary learning from ensemble data, multi-omics alignment, as well as multiscale network alignment.
- Europe > Netherlands > South Holland > Leiden (0.04)
- Asia > Japan > Honshū > Kansai > Kyoto Prefecture > Kyoto (0.04)
- Oceania > Australia > Queensland (0.04)
- (2 more...)
The Z-Gromov-Wasserstein Distance
Bauer, Martin, Mémoli, Facundo, Needham, Tom, Nishino, Mao
The Gromov-Wasserstein (GW) distance is a powerful tool for comparing metric measure spaces which has found broad applications in data science and machine learning. Driven by the need to analyze datasets whose objects have increasingly complex structure (such as node and edge-attributed graphs), several variants of GW distance have been introduced in the recent literature. With a view toward establishing a general framework for the theory of GW-like distances, this paper considers a vast generalization of the notion of a metric measure space: for an arbitrary metric space $Z$, we define a $Z$-network to be a measure space endowed with a kernel valued in $Z$. We introduce a method for comparing $Z$-networks by defining a generalization of GW distance, which we refer to as $Z$-Gromov-Wasserstein ($Z$-GW) distance. This construction subsumes many previously known metrics and offers a unified approach to understanding their shared properties. The paper demonstrates that the $Z$-GW distance defines a metric on the space of $Z$-networks which retains desirable properties of $Z$, such as separability, completeness, and geodesicity. Many of these properties were unknown for existing variants of GW distance that fall under our framework. Our focus is on foundational theory, but our results also include computable lower bounds and approximations of the distance which will be useful for practical applications.
- North America > United States > Ohio (0.04)
- Europe > United Kingdom > England > Cambridgeshire > Cambridge (0.04)
- Europe > Spain > Basque Country > Biscay Province > Bilbao (0.04)
- (2 more...)